Protein Cookie Dough (3 Flavors) Recipe
The Protein Cookie Dough (3 Flavors) is my absolute go-to treat whenever I crave something sweet yet nutritious. Combining the richness of whole wheat flour with the boost from protein powder and the subtle sweetness of maple syrup, this trifecta of flavors—Chocolate Chip, Chocolate, and Funfetti—offers a versatile and delicious snack that satisfies any cookie dough lover’s heart without the guilt. Each flavor is bursting with personality, perfect for every mood or occasion, and best of all, it’s quick and easy to whip up in your own kitchen!

Ingredients You’ll Need
Gathering the right ingredients is the first step to creating perfect Protein Cookie Dough (3 Flavors). These simple yet essential components not only contribute to the flavor and texture but also keep your treat wholesome and nourishing.
- Whole wheat flour (heat treated): Adds a hearty base and great texture while keeping things nutritious.
- Protein powder (vanilla or chocolate): The hero of this recipe, this boosts the protein content and flavor depth.
- Pure maple syrup: Provides natural sweetness for that perfect balance without refined sugars.
- Coconut oil (melted): Enhances richness and creates a smooth, luscious consistency.
- Milk of choice: Helps bring the dough together with just the right moisture.
- Vanilla extract: Elevates all flavors with its warm, comforting notes.
- Mini chocolate chips or rainbow sprinkles: Adds fun texture and visual appeal, tailored to each flavor.
- Unsweetened cocoa powder (for chocolate flavor): Brings deep, rich chocolate goodness to the cookie dough.
How to Make Protein Cookie Dough (3 Flavors)
Step 1: Heat Treat the Flour
To ensure safety and a smooth texture, heat treat the whole wheat flour in a microwave-safe bowl by microwaving it on high for 60 to 90 seconds. Stir well, then heat for an additional 30 seconds. The key temperature to reach is 165°F, which helps eliminate any bacteria without affecting the flour’s flavor or texture. This simple step is crucial for enjoying raw cookie dough safely.
Step 2: Combine Dry Ingredients
Once your flour has cooled slightly, transfer it to a large mixing bowl. Add the protein powder, and if you’re making the chocolate version, include the cocoa powder now. Stir everything together until fully incorporated, creating a flavorful and protein-packed dry blend.
Step 3: Mix in Wet Ingredients
Add the pure maple syrup, melted coconut oil, 2 tablespoons of your chosen milk, and vanilla extract to the dry mixture. Stir thoroughly. If the dough seems too dry or crumbly, gradually add 1 to 2 more tablespoons of milk until the dough comes together smoothly. The texture should be soft but not runny—perfect for scooping.
Step 4: Fold in Mix-ins
Now comes the fun part—fold in your mix-ins! Use mini chocolate chips for the Chocolate Chip and Chocolate flavors to add delightful bursts of melty sweetness. If you’re making the Funfetti version, gently stir in the rainbow sprinkles to give your dough a playful, colorful twist. Make sure everything is evenly distributed for the best bite every time.
How to Serve Protein Cookie Dough (3 Flavors)

Garnishes
Add a little extra flair to your Protein Cookie Dough (3 Flavors) with simple garnishes like a sprinkle of extra mini chocolate chips, a dusting of cocoa powder, or a few colorful sprinkles on top. Not only does this make your treat look irresistible, but it also enhances texture and taste with every bite.
Side Dishes
Protein cookie dough is incredibly versatile when it comes to pairing. Enjoy it alongside a glass of cold almond milk or your favorite coffee for a delightful snack break. It also pairs beautifully with fresh fruit like sliced strawberries or banana, which adds natural sweetness and freshness that perfectly complement the richness of the dough.
Creative Ways to Present
For a fun twist, serve your Protein Cookie Dough (3 Flavors) in small mason jars layered with Greek yogurt and berries for a parfait-style treat. Another idea is to scoop portions onto banana slices and freeze them for bite-sized frozen cookie dough pops—great for when you want a cool, protein-packed indulgence on a hot day.
Make Ahead and Storage
Storing Leftovers
Leftover Protein Cookie Dough (3 Flavors) keeps wonderfully in the refrigerator for 4 to 5 days. Just transfer it to an airtight container and pop it in the fridge. Keep in mind the dough will firm up when chilled, so let it sit at room temperature for a bit before enjoying to regain that perfect soft, chewy texture.
Freezing
If you want to keep your cookie dough fresh longer or prepare it ahead for busy days, freezing is a great option. Portion the dough into balls or logs, wrap tightly in plastic wrap, and place in a freezer-safe container or ziplock bag. When ready, thaw overnight in the fridge or for an hour at room temperature to enjoy.
Reheating
Because this recipe is designed to be eaten raw and safe due to heat treated flour, reheating isn’t necessary. However, if you prefer a softer dough after refrigeration or freezing, simply let it come to room temperature or warm briefly in your hands. Enjoy the wonderful texture without any cooking involved!
FAQs
Can I substitute the whole wheat flour?
Yes, but it’s important to heat treat any flour you use to keep the dough safe to eat raw. You can try oat flour or gluten-free blends, but the texture may vary slightly from the original recipe.
What kind of protein powder works best?
Vanilla and chocolate protein powders work wonderfully for these flavors. Choose your favorite type, whether whey, plant-based, or collagen, as each will impact the flavor and texture subtly but deliciously.
Is this recipe suitable for vegans?
Absolutely! Just make sure your protein powder is vegan-friendly and use plant-based milk. Coconut oil and maple syrup also perfectly fit into a vegan diet, making this treat a fantastic option for everyone.
Can I add nuts or different mix-ins?
Definitely! Chopped nuts, seeds, or dried fruit can add exciting textures and flavors. Just fold them in with the chips or sprinkles to keep the mix evenly balanced.
How can I make the dough sweeter or less sweet?
Adjust the maple syrup to taste—add a bit more for extra sweetness or reduce slightly for a milder flavor. You can also experiment with adding a touch of cinnamon or a pinch of sea salt to enhance the sweetness naturally.
Final Thoughts
Protein Cookie Dough (3 Flavors) has quickly become one of my favorite easy-to-make indulgences that feels like a special treat but packs a nourishing punch. Whether you go for the classic Chocolate Chip, rich Chocolate, or playful Funfetti, this recipe offers variety and flavor that will brighten your snacking routine. I highly encourage you to try it out and enjoy the fun, creamy goodness any time you want that perfect balance of health and indulgence!
PrintProtein Cookie Dough (3 Flavors) Recipe
This Protein Cookie Dough recipe offers three delicious flavors—Chocolate Chip, Chocolate, and Funfetti—all made with wholesome ingredients like whole wheat flour, protein powder, and natural sweeteners. Perfect for a healthy snack or dessert, this cookie dough is safe to eat raw, packed with protein, and easy to customize with your favorite add-ins such as mini chocolate chips or rainbow sprinkles.
- Prep Time: 10 minutes
- Cook Time: 2 minutes (flour heating time)
- Total Time: 12 minutes
- Yield: About 8 servings per batch 1x
- Category: Snack, Dessert
- Method: No Bake, Mixing
- Cuisine: American
- Diet: Vegetarian
Ingredients
Chocolate Chip Protein Cookie Dough
- 1 cup whole wheat flour (heat treated)
- ½ cup vanilla protein powder
- ⅓ cup pure maple syrup
- 2 tbsp coconut oil, melted
- 2–4 tbsp milk of choice
- 1 tsp vanilla extract
- ½ cup mini chocolate chips
Chocolate Protein Cookie Dough
- ¾ cup whole wheat flour (heat treated)
- ¼ cup unsweetened cocoa powder
- ½ cup chocolate protein powder
- ⅓ cup pure maple syrup
- 2 tbsp coconut oil, melted
- 2–4 tbsp milk of choice
- 1 tsp vanilla extract
- ½ cup mini chocolate chips
Funfetti Protein Cookie Dough
- 1 cup whole wheat flour (heat treated)
- ½ cup vanilla protein powder
- ⅓ cup pure maple syrup
- 2 tbsp coconut oil, melted
- 2–4 tbsp milk of choice
- 2 tsp vanilla extract
- ¼ cup rainbow sprinkles
Instructions
- Heat the Flour: In a microwave-safe bowl, heat the whole wheat flour for 60-90 seconds on high, then stir. Heat for an additional 30 seconds until the temperature reaches 165°F, which ensures any potential bacteria are eliminated. Transfer the warmed flour to a large mixing bowl.
- Combine Dry Ingredients: Add the protein powder (and cocoa powder if making the chocolate flavor) to the flour. Stir well to evenly distribute all dry ingredients.
- Add Wet Ingredients: Pour in the pure maple syrup, melted coconut oil, 2 tablespoons of your preferred milk, and vanilla extract. Stir until the mixture begins to come together. If the dough feels too dry, gradually add 1-2 more tablespoons of milk until the desired consistency is reached.
- Mix in Add-ins: Fold in either mini chocolate chips for the chocolate chip or chocolate versions, or rainbow sprinkles for the funfetti version. Mix until they are evenly incorporated throughout the dough.
- Store Properly: Place the dough in an airtight container and refrigerate for 4-5 days. Keep in mind that the dough will harden in the fridge, so allow it to come to room temperature before eating for easier handling. Alternatively, portion out servings before refrigerating for convenient grab-and-go treats.
Notes
- The flour must be heat treated by microwaving to make this dough safe to eat raw by killing any bacteria.
- If the dough is too dry, milk can be added gradually to reach a soft, pliable texture.
- Storing the dough in the fridge causes it to harden; bring to room temperature before consuming.
- Individual portions can be pre-made and refrigerated for easy snacks.
- Use your preferred milk such as almond, oat, cow’s milk, or any other to customize flavor and dietary needs.
- These recipes are naturally sweetened with pure maple syrup and contain no added refined sugars.
Nutrition
- Serving Size: 1/8 of the recipe
- Calories: 150
- Sugar: 8g
- Sodium: 40mg
- Fat: 7g
- Saturated Fat: 5g
- Unsaturated Fat: 2g
- Trans Fat: 0g
- Carbohydrates: 18g
- Fiber: 3g
- Protein: 8g
- Cholesterol: 0mg
Keywords: protein cookie dough, no bake cookie dough, healthy cookie dough, protein snack, chocolate chip protein cookie dough, funfetti cookie dough, high protein snack