Chocolate Thumbprint Cookies with Rich Chocolate Ganache Recipe
Introduction
These Chocolate Thumbprint Cookies are a deliciously rich treat with a tender chocolate base and a glossy chocolate ganache filling. Perfect for any chocolate lover, they combine a soft, cocoa-infused cookie with a smooth, creamy center.

Ingredients
- 1 1/2 cups (188 g) all-purpose flour, spooned and leveled
- 1/2 cup (40 g) cocoa powder (Dutch process)
- 1/2 tsp salt
- 1/2 tsp baking powder
- 3/4 cup (168 g) unsalted butter, softened
- 3/4 cup (165 g) light brown sugar, packed
- 1/4 cup (50 g) granulated white sugar
- 2 egg yolks, at room temperature
- 1 1/2 tsp vanilla bean paste or extract
- 1 cup (200 g) semi-sweet chocolate chips
- 1/2 cup (120 ml) heavy whipping cream
- Nonpareils for sprinkling on top (optional)
Instructions
- Step 1: Line two baking sheets with parchment paper and set aside.
- Step 2: In a medium bowl, whisk together the flour, cocoa powder, salt, and baking powder. Set aside.
- Step 3: In a large bowl, cream the softened butter with the brown sugar and granulated sugar using an electric mixer for about two minutes.
- Step 4: Add the egg yolks and vanilla paste or extract to the butter-sugar mixture. Mix until pale and fluffy, about 1-2 minutes.
- Step 5: Gradually add the dry ingredients to the wet ingredients, mixing just until combined.
- Step 6: Scoop the dough into 34 portions, about 1 tablespoon each, and roll into balls.
- Step 7: Place the dough balls on the prepared baking sheets. Use a 1/4 teaspoon to press down on each ball to create an indent.
- Step 8: Chill the dough balls for at least one hour. You may chill all together on one sheet then separate before baking.
- Step 9: Preheat the oven to 350°F (175°C). Arrange dough balls about 1 1/2 inches apart on the baking sheets.
- Step 10: Bake for 9-11 minutes, ideally 10 minutes, until set.
- Step 11: While still warm, press down gently with a 1/4 teaspoon to reinforce the indent, and optionally use a circular cookie cutter to perfect the shape and size.
- Step 12: Cool the cookies on the baking sheet for 5 minutes, then transfer to a wire rack to cool completely.
- Step 13: For the ganache, place the chocolate chips in a small bowl.
- Step 14: Heat the heavy cream until just about boiling, then pour it over the chocolate chips. Let sit for 1 minute.
- Step 15: Stir the mixture gently until smooth and glossy.
- Step 16: Spoon about 1 teaspoon of ganache into each cookie indent, adding more if there is room.
- Step 17: If desired, sprinkle nonpareils or other decorations on top.
- Step 18: Chill the cookies in the refrigerator for 10-15 minutes to let the ganache set.
Tips & Variations
- Substitute semi-sweet chocolate chips with dark or milk chocolate for a different flavor profile.
- Use flavored extracts like almond or mint in place of vanilla for a twist.
- Chill dough longer to enhance shape retention during baking.
- For a festive touch, use colored sprinkles or edible glitter on top.
Storage
Store leftover cookies in an airtight container in the refrigerator for up to three days. Before serving, allow the cookies to come to room temperature, or enjoy chilled if you prefer the ganache firmer. These cookies do not freeze well due to the ganache filling.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I use regular cocoa powder instead of Dutch process?
Yes, regular cocoa powder can be used, but it might give a slightly different flavor and color. Dutch process cocoa has a smoother, less acidic taste which complements the cookies nicely.
Can I make these cookies vegan?
To make a vegan version, substitute the butter with a vegan butter alternative, and replace egg yolks with a suitable egg replacer such as flaxseed meal mixed with water. Use dairy-free chocolate chips and cream substitutes for the ganache.
PrintChocolate Thumbprint Cookies with Rich Chocolate Ganache Recipe
These Chocolate Thumbprint Cookies are rich, fudgy, and perfectly chewy with a deep chocolate flavor enhanced by a silky chocolate ganache filling. Made with a combination of cocoa powder and semi-sweet chocolate, these cookies are delightfully indulgent and topped optionally with colorful nonpareils for a fun, festive touch.
- Prep Time: 20 minutes
- Cook Time: 11 minutes
- Total Time: 1 hour 35 minutes
- Yield: 34 cookies 1x
- Category: Dessert
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Dry Ingredients
- 1 1/2 cups (188 g) all-purpose flour, spooned and leveled
- 1/2 cup (40 g) cocoa powder (Dutch process)
- 1/2 tsp salt
- 1/2 tsp baking powder
Wet Ingredients and Dough
- 3/4 cup (168 g) unsalted butter, softened
- 3/4 cup (165 g) light brown sugar, packed
- 1/4 cup (50 g) granulated white sugar
- 2 egg yolks, at room temperature
- 1 1/2 tsp vanilla bean paste or extract
Chocolate Ganache
- 1 cup (200 g) semi-sweet chocolate chips
- 1/2 cup (120 ml) heavy whipping cream
Optional Topping
- Nonpareils for sprinkling on top
Instructions
- Prepare the Dry Ingredients: In a medium bowl, whisk together the all-purpose flour, cocoa powder, salt, and baking powder until fully combined and set aside.
- Cream Butter and Sugars: Using an electric mixer, cream together the softened unsalted butter, light brown sugar, and granulated white sugar for two minutes until smooth and fluffy.
- Add Egg Yolks and Vanilla: Beat in the egg yolks and vanilla bean paste or extract until the mixture turns pale and fluffy, approximately 1-2 minutes.
- Combine Dry and Wet Ingredients: Gradually add the dry ingredient mixture to the wet ingredients, mixing gently just until combined to form the cookie dough.
- Portion and Shape Dough: Scoop out the dough into 34 portions, each about 1 tablespoon. Roll each portion into a ball and transfer onto two parchment-lined baking sheets.
- Create Indents: Using a 1/4 teaspoon measure, press down on each dough ball to create an indent for the filling.
- Chill the Dough: Refrigerate the prepared dough balls for at least one hour to firm up. You may chill them together on one baking sheet before separating onto multiple sheets for baking.
- Preheat Oven: Set your oven temperature to 350°F (175°C) to get ready for baking.
- Bake the Cookies: Arrange the dough balls about 1 1/2 inches apart on the baking sheets and bake for 9-11 minutes, with 10 minutes being ideal for perfect texture.
- Refine Cookie Shape: Once out of the oven, gently press the centers again with a 1/4 teaspoon to restore the indents and use a circular cookie cutter to smooth edges while still warm.
- Cool Cookies: Let the cookies cool on the baking sheet for 5 minutes before transferring them to a wire rack to cool completely.
- Make the Chocolate Ganache: Place the semi-sweet chocolate chips in a small bowl. Heat the heavy whipping cream just until it starts boiling (microwave or stovetop), then pour over the chocolate chips. Let sit for 1 minute.
- Mix Ganache: Stir the chocolate and cream mixture until smooth and glossy to form the ganache filling.
- Fill the Cookies: Spoon about 1 teaspoon of ganache into each cookie indent, adding more ganache if space allows.
- Add Optional Sprinkles: If desired, sprinkle nonpareils over the ganache for a decorative touch.
- Set the Ganache: Chill the assembled cookies in the refrigerator for 10-15 minutes to allow the ganache to firm up.
- Storage: Store leftover cookies in an airtight container at room temperature for up to three days to maintain freshness.
Notes
- Use Dutch process cocoa powder for a richer chocolate flavor.
- Spooning and leveling the flour ensures accurate measurement for the perfect cookie texture.
- Chilling the dough before baking prevents spreading and helps set the indent shape.
- Pressing the center again after baking restores the thumbprint indent that can puff up during baking.
- Allowing the ganache to set by chilling helps prevent it from melting or running off when served.
- These cookies can be stored at room temperature for three days; for longer storage, refrigerate and bring back to room temperature before serving.
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